J3_9NLQ_008

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGA*UUAAAGAAA*UCACU

Length

18 nucleotides

Bulged bases

9NLQ|1|R1|A|1084, 9NLQ|1|R1|A|1085, 9NLQ|1|R1|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLQ|1|R1|A|1054
9NLQ|1|R1|G|1055
9NLQ|1|R1|G|1056
9NLQ|1|R1|A|1057
*
9NLQ|1|R1|U|1082
9NLQ|1|R1|U|1083
9NLQ|1|R1|A|1084
9NLQ|1|R1|A|1085
9NLQ|1|R1|A|1086
9NLQ|1|R1|G|1087
9NLQ|1|R1|A|1088
9NLQ|1|R1|A|1089
9NLQ|1|R1|A|1090
*
9NLQ|1|R1|U|1101
9NLQ|1|R1|C|1102
9NLQ|1|R1|A|1103
9NLQ|1|R1|C|1104
9NLQ|1|R1|U|1105

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36