J3_9NLQ_014

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUGU*GGAUAG*CCUU

Length

14 nucleotides

Bulged bases

9NLQ|1|R1|U|2118, 9NLQ|1|R1|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLQ|1|R1|A|2108
9NLQ|1|R1|U|2109
9NLQ|1|R1|G|2110
9NLQ|1|R1|U|2111
*
9NLQ|1|R1|G|2115
9NLQ|1|R1|G|2116
9NLQ|1|R1|A|2117
9NLQ|1|R1|U|2118
9NLQ|1|R1|A|2119
9NLQ|1|R1|G|2120
*
9NLQ|1|R1|C|2178
9NLQ|1|R1|C|2179
9NLQ|1|R1|U|2180
9NLQ|1|R1|U|2181

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT