J3_9NLQ_015
3D structure
- PDB id
- 9NLQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 9NLQ|1|R1|U|2334, 9NLQ|1|R1|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NLQ_015 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.1059
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9NLQ|1|R1|C|2295
9NLQ|1|R1|U|2296
9NLQ|1|R1|A|2297
9NLQ|1|R1|A|2298
9NLQ|1|R1|U|2299
*
9NLQ|1|R1|A|2317
9NLQ|1|R1|G|2318
9NLQ|1|R1|G|2319
9NLQ|1|R1|U|2320
9NLQ|1|R1|U|2321
9NLQ|1|R1|A|2322
9NLQ|1|R1|G|2323
*
9NLQ|1|R1|C|2332
9NLQ|1|R1|A|2333
9NLQ|1|R1|U|2334
9NLQ|1|R1|A|2335
9NLQ|1|R1|A|2336
9NLQ|1|R1|G|2337
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 18
- Large ribosomal subunit protein uL18
- Chain 27
- Large ribosomal subunit protein bL27
- Chain 5
- 50S ribosomal protein L5
- Chain R2
- 5S ribosomal RNA; 5S rRNA
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