J3_9NLQ_016

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9NLQ|1|R1|A|2518, 9NLQ|1|R1|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLQ_016 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1099

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9NLQ|1|R1|C|2517
9NLQ|1|R1|A|2518
9NLQ|1|R1|U|2519
9NLQ|1|R1|C|2520
*
9NLQ|1|R1|G|2545
9NLQ|1|R1|U|2546
9NLQ|1|R1|A|2547
*
9NLQ|1|R1|U|2561
9NLQ|1|R1|U|2562
9NLQ|1|R1|U|2563
9NLQ|1|R1|A|2564
9NLQ|1|R1|A|2565
9NLQ|1|R1|A|2566
9NLQ|1|R1|G|2567

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 3

50S ribosomal protein L3