J3_9NLQ_031

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*UGUGC*GAAC

Length

13 nucleotides

Bulged bases

9NLQ|1|R3|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLQ|1|R3|G|1003
9NLQ|1|R3|A|1004
9NLQ|1|R3|A|1005
9NLQ|1|R3|G|1006
*
9NLQ|1|R3|U|1023
9NLQ|1|R3|G|1024
9NLQ|1|R3|U|1025
9NLQ|1|R3|G|1026
9NLQ|1|R3|C|1027
*
9NLQ|1|R3|G|1034
9NLQ|1|R3|A|1035
9NLQ|1|R3|A|1036
9NLQ|1|R3|C|1037

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14