J3_9NLS_004

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

9NLS|1|R1|U|72, 9NLS|1|R1|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_004 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0831

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

9NLS|1|R1|A|56
9NLS|1|R1|C|57
*
9NLS|1|R1|G|70
9NLS|1|R1|A|71
9NLS|1|R1|U|72
9NLS|1|R1|A|73
9NLS|1|R1|A|74
9NLS|1|R1|G|75
9NLS|1|R1|C|76
*
9NLS|1|R1|G|110
9NLS|1|R1|A|111
9NLS|1|R1|U|112
9NLS|1|R1|U|113
9NLS|1|R1|U|114

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23

Chain 29

Large ribosomal subunit protein uL29

Chain 34

50S ribosomal protein L34