J3_9NLS_005

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9NLS|1|R1|U|321, 9NLS|1|R1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0755

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NLS|1|R1|G|297
9NLS|1|R1|G|298
9NLS|1|R1|A|299
9NLS|1|R1|A|300
9NLS|1|R1|G|301
*
9NLS|1|R1|C|316
9NLS|1|R1|G|317
9NLS|1|R1|C|318
9NLS|1|R1|G|319
9NLS|1|R1|A|320
9NLS|1|R1|U|321
9NLS|1|R1|A|322
9NLS|1|R1|C|323
9NLS|1|R1|A|324
9NLS|1|R1|G|325
*
9NLS|1|R1|C|337
9NLS|1|R1|G|338
9NLS|1|R1|U|339
9NLS|1|R1|A|340
9NLS|1|R1|C|341

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4