J3_9NLS_007

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_007 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0691

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9NLS|1|R1|C|698
9NLS|1|R1|A|699
9NLS|1|R1|G|700
*
9NLS|1|R1|C|732
9NLS|1|R1|G|733
9NLS|1|R1|A|734
9NLS|1|R1|A|735
9NLS|1|R1|C|736
*
9NLS|1|R1|G|760
9NLS|1|R1|A|761
9NLS|1|R1|U|762
9NLS|1|R1|G|763

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2