J3_9NLS_008

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGGA*UUAAAGAAA*UCACUG

Length

20 nucleotides

Bulged bases

9NLS|1|R1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R1|C|1053
9NLS|1|R1|A|1054
9NLS|1|R1|G|1055
9NLS|1|R1|G|1056
9NLS|1|R1|A|1057
*
9NLS|1|R1|U|1082
9NLS|1|R1|U|1083
9NLS|1|R1|A|1084
9NLS|1|R1|A|1085
9NLS|1|R1|A|1086
9NLS|1|R1|G|1087
9NLS|1|R1|A|1088
9NLS|1|R1|A|1089
9NLS|1|R1|A|1090
*
9NLS|1|R1|U|1101
9NLS|1|R1|C|1102
9NLS|1|R1|A|1103
9NLS|1|R1|C|1104
9NLS|1|R1|U|1105
9NLS|1|R1|G|1106

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36