J3_9NLS_011

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_011 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.132

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9NLS|1|R1|U|1344
9NLS|1|R1|C|1345
9NLS|1|R1|G|1346
9NLS|1|R1|A|1347
9NLS|1|R1|C|1348
9NLS|1|R1|C|1349
*
9NLS|1|R1|G|1382
9NLS|1|R1|A|1383
9NLS|1|R1|A|1384
9NLS|1|R1|A|1385
*
9NLS|1|R1|U|1402
9NLS|1|R1|A|1403

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL23