J3_9NLS_020

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAUUG*CAGC

Length

22 nucleotides

Bulged bases

9NLS|1|R3|C|48, 9NLS|1|R3|A|51, 9NLS|1|R3|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R3|G|46
9NLS|1|R3|C|47
9NLS|1|R3|C|48
9NLS|1|R3|U|49
9NLS|1|R3|A|50
9NLS|1|R3|A|51
9NLS|1|R3|C|52
*
9NLS|1|R3|G|359
9NLS|1|R3|G|360
9NLS|1|R3|G|361
9NLS|1|R3|G|362
9NLS|1|R3|A|363
9NLS|1|R3|A|364
9NLS|1|R3|U|365
9NLS|1|R3|A|366
9NLS|1|R3|U|367
9NLS|1|R3|U|368
9NLS|1|R3|G|369
*
9NLS|1|R3|C|392
9NLS|1|R3|A|393
9NLS|1|R3|G|394
9NLS|1|R3|C|395

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sp

Small ribosomal subunit protein bS16