J3_9NLS_021

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

9NLS|1|R3|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_021 not in the Motif Atlas

Geometric match to J3_5J7L_002

Geometric discrepancy: 0.095

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9NLS|1|R3|C|586
9NLS|1|R3|G|587
9NLS|1|R3|G|588
*
9NLS|1|R3|C|651
9NLS|1|R3|U|652
9NLS|1|R3|U|653
9NLS|1|R3|G|654
*
9NLS|1|R3|C|754
9NLS|1|R3|G|755

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sh

30S ribosomal protein S8

Chain sl

Small ribosomal subunit protein uS12

Chain so

Small ribosomal subunit protein uS15

Chain sq

Small ribosomal subunit protein uS17