J3_9NLS_028

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9NLS|1|R3|U|1212, 9NLS|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_028 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1594

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9NLS|1|R3|C|990
9NLS|1|R3|U|991
9NLS|1|R3|U|992
9NLS|1|R3|G|993
9NLS|1|R3|A|994
9NLS|1|R3|C|995
9NLS|1|R3|A|996
9NLS|1|R3|U|997
*
9NLS|1|R3|A|1044
9NLS|1|R3|C|1045
9NLS|1|R3|A|1046
9NLS|1|R3|G|1047
*
9NLS|1|R3|C|1210
9NLS|1|R3|U|1211
9NLS|1|R3|U|1212
9NLS|1|R3|A|1213
9NLS|1|R3|C|1214
9NLS|1|R3|G|1215

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14