J3_9O3J_015

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

9O3J|1|1A|A|2388, 9O3J|1|1A|U|2390, 9O3J|1|1A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3J_015 not in the Motif Atlas

Geometric match to J3_9DFE_015

Geometric discrepancy: 0.0518

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9O3J|1|1A|G|2282
9O3J|1|1A|C|2283
9O3J|1|1A|C|2284
*
9O3J|1|1A|G|2384
9O3J|1|1A|C|2385
9O3J|1|1A|C|2386
9O3J|1|1A|U|2387
9O3J|1|1A|A|2388
9O3J|1|1A|G|2389
9O3J|1|1A|U|2390
9O3J|1|1A|G|2391
9O3J|1|1A|A|2392
9O3J|1|1A|A|2393
9O3J|1|1A|C|2394
9O3J|1|1A|C|2395
*
9O3J|1|1A|G|2421
9O3J|1|1A|A|2422
9O3J|1|1A|U|2423
9O3J|1|1A|C|2424
9O3J|1|1A|A|2425
9O3J|1|1A|A|2426
9O3J|1|1A|C|2427

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15

Chain 1y

Transfer RNA; tRNA