J3_9O3J_052

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCAG*CGGAGAG*UAGAAG

Length

18 nucleotides

Bulged bases

9O3J|1|2A|G|2334, 9O3J|1|2A|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3J|1|2A|C|2295
9O3J|1|2A|U|2296
9O3J|1|2A|C|2297
9O3J|1|2A|A|2298
9O3J|1|2A|G|2299
*
9O3J|1|2A|C|2317
9O3J|1|2A|G|2318
9O3J|1|2A|G|2319
9O3J|1|2A|A|2320
9O3J|1|2A|G|2321
9O3J|1|2A|A|2322
9O3J|1|2A|G|2323
*
9O3J|1|2A|U|2332
9O3J|1|2A|A|2333
9O3J|1|2A|G|2334
9O3J|1|2A|A|2335
9O3J|1|2A|A|2336
9O3J|1|2A|G|2337

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S ribosomal protein L5

Chain 2S

50S ribosomal protein L18

Chain 2x

Transfer RNA; tRNA