J3_9O3W_002

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9O3W|1|L5|C|216, 9O3W|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|C|196
9O3W|1|L5|A|197
9O3W|1|L5|A|198
9O3W|1|L5|G|199
*
9O3W|1|L5|C|215
9O3W|1|L5|C|216
9O3W|1|L5|C|217
9O3W|1|L5|A|218
9O3W|1|L5|G|219
9O3W|1|L5|C|220
9O3W|1|L5|C|221
9O3W|1|L5|C|222
9O3W|1|L5|G|223
9O3W|1|L5|U|224
9O3W|1|L5|G|225
9O3W|1|L5|G|226
9O3W|1|L5|A|227
9O3W|1|L5|C|228
*
9O3W|1|L5|G|240
9O3W|1|L5|G|241
9O3W|1|L5|U|242
9O3W|1|L5|A|243
9O3W|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24