J3_9O3W_021

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

9O3W|1|L5|A|4280, 9O3W|1|L5|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|C|4241
9O3W|1|L5|U|4242
9O3W|1|L5|C|4243
*
9O3W|1|L5|G|4267
9O3W|1|L5|A|4268
9O3W|1|L5|G|4269
*
9O3W|1|L5|C|4278
9O3W|1|L5|A|4279
9O3W|1|L5|A|4280
9O3W|1|L5|A|4281
9O3W|1|L5|A|4282
9O3W|1|L5|G|4283

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LJ

Large ribosomal subunit protein uL5

Chain LT

Large ribosomal subunit protein eL21

Chain Pt

Transfer RNA; tRNA