J3_9O3W_027
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- AG*CGC(A2M)AAU*(A2M)GU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9O3W_027 not in the Motif Atlas
- Geometric match to J3_9H3G_028
- Geometric discrepancy: 0.0492
- The information below is about J3_9H3G_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.3
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9O3W|1|S2|A|40
9O3W|1|S2|G|41
*
9O3W|1|S2|C|481
9O3W|1|S2|G|482
9O3W|1|S2|C|483
9O3W|1|S2|A2M|484
9O3W|1|S2|A|485
9O3W|1|S2|A|486
9O3W|1|S2|U|487
*
9O3W|1|S2|A2M|512
9O3W|1|S2|G|513
9O3W|1|S2|U|514
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SX
- Small ribosomal subunit protein uS12
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