J3_9O3W_035
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- UGGA*UAC*G(G7M)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9O3W_035 not in the Motif Atlas
- Homologous match to J3_9H3G_036
- Geometric discrepancy: 0.0544
- The information below is about J3_9H3G_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9O3W|1|S2|U|1225
9O3W|1|S2|G|1226
9O3W|1|S2|G|1227
9O3W|1|S2|A|1228
*
9O3W|1|S2|U|1530
9O3W|1|S2|A|1531
9O3W|1|S2|C|1532
*
9O3W|1|S2|G|1638
9O3W|1|S2|G7M|1639
9O3W|1|S2|A|1640
9O3W|1|S2|A|1641
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Pt
- Transfer RNA; tRNA
- Chain SF
- Small ribosomal subunit protein uS7
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain SS
- Small ribosomal subunit protein uS13
- Chain ST
- Small ribosomal subunit protein eS19
- Chain SZ
- Small ribosomal subunit protein eS25
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