J3_9O3W_037

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9O3W|1|S2|G|1274, 9O3W|1|S2|G|1507, 9O3W|1|S2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|C|1272
9O3W|1|S2|C|1273
9O3W|1|S2|G|1274
9O3W|1|S2|G|1275
9O3W|1|S2|A|1276
9O3W|1|S2|C|1277
*
9O3W|1|S2|G|1320
9O3W|1|S2|G|1321
9O3W|1|S2|G|1322
9O3W|1|S2|U|1323
9O3W|1|S2|G|1324
*
9O3W|1|S2|U|1504
9O3W|1|S2|U|1505
9O3W|1|S2|A|1506
9O3W|1|S2|G|1507
9O3W|1|S2|A|1508
9O3W|1|S2|U|1509
9O3W|1|S2|G|1510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS10

Chain Sd

Small ribosomal subunit protein uS14

Chain Sf

Ubiquitin-ribosomal protein eS31 fusion protein