J3_9O3Y_020

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9O3Y|1|L5|C|4337, 9O3Y|1|L5|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3Y|1|L5|OMG|4228
9O3Y|1|L5|U|4229
9O3Y|1|L5|C|4230
*
9O3Y|1|L5|G|4331
9O3Y|1|L5|C|4332
9O3Y|1|L5|C|4333
9O3Y|1|L5|U|4334
9O3Y|1|L5|C|4335
9O3Y|1|L5|A|4336
9O3Y|1|L5|C|4337
9O3Y|1|L5|G|4338
9O3Y|1|L5|A|4339
9O3Y|1|L5|U|4340
9O3Y|1|L5|C|4341
9O3Y|1|L5|C|4342
*
9O3Y|1|L5|OMG|4370
9O3Y|1|L5|G|4371
9O3Y|1|L5|U|4372
9O3Y|1|L5|G|4373
9O3Y|1|L5|U|4374
9O3Y|1|L5|C|4375

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

Large ribosomal subunit protein eL18

Chain LT

Large ribosomal subunit protein eL21

Chain La

60S ribosomal protein L27a

Chain Lo

Large ribosomal subunit protein eL42