J3_9OV3_003

3D structure

PDB id

9OV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme

Experimental method

ELECTRON MICROSCOPY

Resolution

3.19 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9OV3|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OV3_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.1896

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9OV3|1|A|G|140
9OV3|1|A|C|141
9OV3|1|A|G|142
*
9OV3|1|A|C|184
9OV3|1|A|U|185
9OV3|1|A|G|186
9OV3|1|A|A|187
9OV3|1|A|A|188
9OV3|1|A|A|189
9OV3|1|A|G|190
*
9OV3|1|A|C|242
9OV3|1|A|C|243

Current chains

Chain A

RNase P RNA component

Nearby chains