J3_9OV8_003

3D structure

PDB id

9OV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9OV8|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OV8_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.1896

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9OV8|1|A|G|140
9OV8|1|A|C|141
9OV8|1|A|G|142
*
9OV8|1|A|C|184
9OV8|1|A|U|185
9OV8|1|A|G|186
9OV8|1|A|A|187
9OV8|1|A|A|188
9OV8|1|A|A|189
9OV8|1|A|G|190
*
9OV8|1|A|C|242
9OV8|1|A|C|243

Current chains

Chain A

RNase P RNA component

Nearby chains