J3_9OWK_003

3D structure

PDB id

9OWK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 10 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9OWK|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OWK_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.1364

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9OWK|1|A|G|140
9OWK|1|A|C|141
9OWK|1|A|G|142
*
9OWK|1|A|C|184
9OWK|1|A|U|185
9OWK|1|A|G|186
9OWK|1|A|A|187
9OWK|1|A|A|188
9OWK|1|A|A|189
9OWK|1|A|G|190
*
9OWK|1|A|C|242
9OWK|1|A|C|243

Current chains

Chain A

RNase P RNA component

Nearby chains

Chain C

Transfer RNA; tRNA