J3_9OWM_003

3D structure

PDB id

9OWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9OWM|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OWM_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.1662

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9OWM|1|A|G|140
9OWM|1|A|C|141
9OWM|1|A|G|142
*
9OWM|1|A|C|184
9OWM|1|A|U|185
9OWM|1|A|G|186
9OWM|1|A|A|187
9OWM|1|A|A|188
9OWM|1|A|A|189
9OWM|1|A|G|190
*
9OWM|1|A|C|242
9OWM|1|A|C|243

Current chains

Chain A

RNase P RNA component

Nearby chains

Chain C

Transfer RNA; tRNA