J3_9OWN_001

3D structure

PDB id

9OWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (Consensus)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGG*CG*UACAGAACAUGGCUUAUAG

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OWN_001 not in the Motif Atlas

Homologous match to J3_2A64_003

Geometric discrepancy: 0.1598

The information below is about J3_2A64_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82932.1

Basepair signature

cWW-F-F-cWW-cSS-cSS-cWW-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

9OWN|1|A|C|13
9OWN|1|A|G|14
9OWN|1|A|G|15
*
9OWN|1|A|C|344
9OWN|1|A|G|345
*
9OWN|1|A|U|384
9OWN|1|A|A|385
9OWN|1|A|C|386
9OWN|1|A|A|387
9OWN|1|A|G|388
9OWN|1|A|A|389
9OWN|1|A|A|390
9OWN|1|A|C|391
9OWN|1|A|A|392
9OWN|1|A|U|393
9OWN|1|A|G|394
9OWN|1|A|G|395
9OWN|1|A|C|396
9OWN|1|A|U|397
9OWN|1|A|U|398
9OWN|1|A|A|399
9OWN|1|A|U|400
9OWN|1|A|A|401
9OWN|1|A|G|402

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain C

Transfer RNA; tRNA