J3_9OWO_003

3D structure

PDB id

9OWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (sub-conformation 1 of tRNA anticodon arm tilted)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9OWO|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OWO_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.1598

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9OWO|1|A|G|140
9OWO|1|A|C|141
9OWO|1|A|G|142
*
9OWO|1|A|C|184
9OWO|1|A|U|185
9OWO|1|A|G|186
9OWO|1|A|A|187
9OWO|1|A|A|188
9OWO|1|A|A|189
9OWO|1|A|G|190
*
9OWO|1|A|C|242
9OWO|1|A|C|243

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain C

Transfer RNA; tRNA