J3_9OY2_003

3D structure

PDB id

9OY2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9OY2|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OY2_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.2436

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9OY2|1|A|G|140
9OY2|1|A|C|141
9OY2|1|A|G|142
*
9OY2|1|A|C|184
9OY2|1|A|U|185
9OY2|1|A|G|186
9OY2|1|A|A|187
9OY2|1|A|A|188
9OY2|1|A|A|189
9OY2|1|A|G|190
*
9OY2|1|A|C|242
9OY2|1|A|C|243

Current chains

Chain A

RNase P RNA component tetraloop mutant

Nearby chains