J3_9OY4_003

3D structure

PDB id

9OY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Geobacillus stearothermophilus RNase P ribozyme tetraloop mutant (sub-conformation 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GCG*CUGAAAG*CC

Length

12 nucleotides

Bulged bases

9OY4|1|A|C|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OY4_003 not in the Motif Atlas

Homologous match to J3_1NBS_002

Geometric discrepancy: 0.1757

The information below is about J3_1NBS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70464.1

Basepair signature

cWW-cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9OY4|1|A|G|140
9OY4|1|A|C|141
9OY4|1|A|G|142
*
9OY4|1|A|C|184
9OY4|1|A|U|185
9OY4|1|A|G|186
9OY4|1|A|A|187
9OY4|1|A|A|188
9OY4|1|A|A|189
9OY4|1|A|G|190
*
9OY4|1|A|C|242
9OY4|1|A|C|243

Current chains

Chain A

RNase P RNA component tetraloop mutant

Nearby chains