J3_9P6Z_002

3D structure

PDB id

9P6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9P6Z|1|L5|A|218, 9P6Z|1|L5|G|219, 9P6Z|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P6Z|1|L5|C|196
9P6Z|1|L5|A|197
9P6Z|1|L5|A|198
9P6Z|1|L5|G|199
*
9P6Z|1|L5|C|215
9P6Z|1|L5|C|216
9P6Z|1|L5|C|217
9P6Z|1|L5|A|218
9P6Z|1|L5|G|219
9P6Z|1|L5|C|220
9P6Z|1|L5|C|221
9P6Z|1|L5|C|222
9P6Z|1|L5|G|223
9P6Z|1|L5|U|224
9P6Z|1|L5|G|225
9P6Z|1|L5|G|226
9P6Z|1|L5|A|227
9P6Z|1|L5|C|228
*
9P6Z|1|L5|G|240
9P6Z|1|L5|G|241
9P6Z|1|L5|U|242
9P6Z|1|L5|A|243
9P6Z|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26