J3_9P72_002

3D structure

PDB id

9P72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9P72|1|L5|C|216, 9P72|1|L5|C|217, 9P72|1|L5|A|218, 9P72|1|L5|G|219, 9P72|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P72|1|L5|C|196
9P72|1|L5|A|197
9P72|1|L5|A|198
9P72|1|L5|G|199
*
9P72|1|L5|C|215
9P72|1|L5|C|216
9P72|1|L5|C|217
9P72|1|L5|A|218
9P72|1|L5|G|219
9P72|1|L5|C|220
9P72|1|L5|C|221
9P72|1|L5|C|222
9P72|1|L5|G|223
9P72|1|L5|U|224
9P72|1|L5|G|225
9P72|1|L5|G|226
9P72|1|L5|A|227
9P72|1|L5|C|228
*
9P72|1|L5|G|240
9P72|1|L5|G|241
9P72|1|L5|U|242
9P72|1|L5|A|243
9P72|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26