J3_9P76_022

3D structure

PDB id

9P76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF1A-A/T-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9P76|1|L5|C|4337, 9P76|1|L5|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P76|1|L5|OMG|4228
9P76|1|L5|U|4229
9P76|1|L5|C|4230
*
9P76|1|L5|G|4331
9P76|1|L5|C|4332
9P76|1|L5|C|4333
9P76|1|L5|U|4334
9P76|1|L5|C|4335
9P76|1|L5|A|4336
9P76|1|L5|C|4337
9P76|1|L5|G|4338
9P76|1|L5|A|4339
9P76|1|L5|U|4340
9P76|1|L5|C|4341
9P76|1|L5|C|4342
*
9P76|1|L5|OMG|4370
9P76|1|L5|G|4371
9P76|1|L5|U|4372
9P76|1|L5|G|4373
9P76|1|L5|U|4374
9P76|1|L5|C|4375

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a