J3_9P79_006

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9P79|1|L5|G|959, 9P79|1|L5|C|962, 9P79|1|L5|C|967, 9P79|1|L5|C|968, 9P79|1|L5|C|969, 9P79|1|L5|U|971, 9P79|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|C|712
9P79|1|L5|C|713
*
9P79|1|L5|G|955
9P79|1|L5|A|956
9P79|1|L5|G|957
9P79|1|L5|G|958
9P79|1|L5|G|959
9P79|1|L5|A|960
9P79|1|L5|G|961
9P79|1|L5|C|962
9P79|1|L5|G|963
9P79|1|L5|A|964
9P79|1|L5|G|965
9P79|1|L5|A|966
9P79|1|L5|C|967
9P79|1|L5|C|968
9P79|1|L5|C|969
9P79|1|L5|G|970
9P79|1|L5|U|971
9P79|1|L5|C|972
9P79|1|L5|G|973
9P79|1|L5|C|974
9P79|1|L5|C|975
9P79|1|L5|G|976
*
9P79|1|L5|C|1278
9P79|1|L5|A|1279
9P79|1|L5|C|1280
9P79|1|L5|G|1281
9P79|1|L5|G|1282
9P79|1|L5|G|1283
9P79|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32