J3_9P79_009

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9P79|1|L5|A|1805, 9P79|1|L5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|U|1726
9P79|1|L5|U|1727
*
9P79|1|L5|A|1802
9P79|1|L5|G|1803
9P79|1|L5|A|1804
9P79|1|L5|A|1805
9P79|1|L5|G|1806
*
9P79|1|L5|C|1832
9P79|1|L5|G|1833
9P79|1|L5|U|1834
9P79|1|L5|G|1835
9P79|1|L5|G|1836
9P79|1|L5|A|1837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29