J3_9P79_021

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9P79|1|L5|C|4337, 9P79|1|L5|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|OMG|4228
9P79|1|L5|U|4229
9P79|1|L5|C|4230
*
9P79|1|L5|G|4331
9P79|1|L5|C|4332
9P79|1|L5|C|4333
9P79|1|L5|U|4334
9P79|1|L5|C|4335
9P79|1|L5|A|4336
9P79|1|L5|C|4337
9P79|1|L5|G|4338
9P79|1|L5|A|4339
9P79|1|L5|U|4340
9P79|1|L5|C|4341
9P79|1|L5|C|4342
*
9P79|1|L5|OMG|4370
9P79|1|L5|G|4371
9P79|1|L5|U|4372
9P79|1|L5|G|4373
9P79|1|L5|U|4374
9P79|1|L5|C|4375

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a

Chain Zt

Transfer RNA; tRNA