J3_9P79_028

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|S2|A|40
9P79|1|S2|G|41
*
9P79|1|S2|C|481
9P79|1|S2|G|482
9P79|1|S2|C|483
9P79|1|S2|A2M|484
9P79|1|S2|A|485
9P79|1|S2|A|486
9P79|1|S2|U|487
*
9P79|1|S2|A|512
9P79|1|S2|G|513
9P79|1|S2|U|514

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23