J3_9P79_036

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGA*UAC*G(G7M)AA

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|S2|U|1225
9P79|1|S2|G|1226
9P79|1|S2|G|1227
9P79|1|S2|A|1228
*
9P79|1|S2|U|1530
9P79|1|S2|A|1531
9P79|1|S2|C|1532
*
9P79|1|S2|G|1638
9P79|1|S2|G7M|1639
9P79|1|S2|A|1640
9P79|1|S2|A|1641

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

Small ribosomal subunit protein uS9

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19