J3_9P7A_006

3D structure

PDB id

9P7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human hibernating class2 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9P7A|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7A|1|L5|C|451
9P7A|1|L5|A|452
9P7A|1|L5|G|453
9P7A|1|L5|U|454
9P7A|1|L5|C|455
*
9P7A|1|L5|G|701
9P7A|1|L5|U|702
9P7A|1|L5|G|703
9P7A|1|L5|C|704
9P7A|1|L5|G|705
*
9P7A|1|L5|C|1292
9P7A|1|L5|G|1293
9P7A|1|L5|A|1294
9P7A|1|L5|C|1295
9P7A|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28