J3_9P7C_021

3D structure

PDB id

9P7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC

Length

29 nucleotides

Bulged bases

9P7C|1|L5|C|4114, 9P7C|1|L5|G|4115, 9P7C|1|L5|C|4116, 9P7C|1|L5|U|4117, 9P7C|1|L5|U|4118, 9P7C|1|L5|C|4119, 9P7C|1|L5|U|4120, 9P7C|1|L5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7C|1|L5|G|4091
9P7C|1|L5|G|4092
9P7C|1|L5|G|4093
9P7C|1|L5|G|4094
9P7C|1|L5|G|4095
9P7C|1|L5|C|4096
9P7C|1|L5|G|4097
*
9P7C|1|L5|C|4112
9P7C|1|L5|U|4113
9P7C|1|L5|C|4114
9P7C|1|L5|G|4115
9P7C|1|L5|C|4116
9P7C|1|L5|U|4117
9P7C|1|L5|U|4118
9P7C|1|L5|C|4119
9P7C|1|L5|U|4120
9P7C|1|L5|G|4121
9P7C|1|L5|G|4122
9P7C|1|L5|C|4123
9P7C|1|L5|G|4124
9P7C|1|L5|C|4125
9P7C|1|L5|C|4126
9P7C|1|L5|A|4127
9P7C|1|L5|A|4128
9P7C|1|L5|G|4129
*
9P7C|1|L5|C|4155
9P7C|1|L5|G|4156
9P7C|1|L5|A|4157
9P7C|1|L5|C|4158

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a

Chain SB

40S ribosomal protein S3a