J3_9P7E_007

3D structure

PDB id

9P7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9P7E|1|L5|G|959, 9P7E|1|L5|C|962, 9P7E|1|L5|G|965, 9P7E|1|L5|C|967, 9P7E|1|L5|U|971, 9P7E|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7E|1|L5|C|712
9P7E|1|L5|C|713
*
9P7E|1|L5|G|955
9P7E|1|L5|A|956
9P7E|1|L5|G|957
9P7E|1|L5|G|958
9P7E|1|L5|G|959
9P7E|1|L5|A|960
9P7E|1|L5|G|961
9P7E|1|L5|C|962
9P7E|1|L5|G|963
9P7E|1|L5|A|964
9P7E|1|L5|G|965
9P7E|1|L5|A|966
9P7E|1|L5|C|967
9P7E|1|L5|C|968
9P7E|1|L5|C|969
9P7E|1|L5|G|970
9P7E|1|L5|U|971
9P7E|1|L5|C|972
9P7E|1|L5|G|973
9P7E|1|L5|C|974
9P7E|1|L5|C|975
9P7E|1|L5|G|976
*
9P7E|1|L5|C|1278
9P7E|1|L5|A|1279
9P7E|1|L5|C|1280
9P7E|1|L5|G|1281
9P7E|1|L5|G|1282
9P7E|1|L5|G|1283
9P7E|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32