J3_9P7F_005

3D structure

PDB id

9P7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9P7F|1|L5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7F|1|L5|C|451
9P7F|1|L5|A|452
9P7F|1|L5|G|453
9P7F|1|L5|U|454
9P7F|1|L5|C|455
*
9P7F|1|L5|G|701
9P7F|1|L5|U|702
9P7F|1|L5|G|703
9P7F|1|L5|C|704
9P7F|1|L5|G|705
*
9P7F|1|L5|C|1292
9P7F|1|L5|G|1293
9P7F|1|L5|A|1294
9P7F|1|L5|C|1295
9P7F|1|L5|G|1296

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28