J3_9P7F_006

3D structure

PDB id

9P7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9P7F|1|L5|G|959, 9P7F|1|L5|C|962, 9P7F|1|L5|G|965, 9P7F|1|L5|C|967, 9P7F|1|L5|U|971, 9P7F|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7F|1|L5|C|712
9P7F|1|L5|C|713
*
9P7F|1|L5|G|955
9P7F|1|L5|A|956
9P7F|1|L5|G|957
9P7F|1|L5|G|958
9P7F|1|L5|G|959
9P7F|1|L5|A|960
9P7F|1|L5|G|961
9P7F|1|L5|C|962
9P7F|1|L5|G|963
9P7F|1|L5|A|964
9P7F|1|L5|G|965
9P7F|1|L5|A|966
9P7F|1|L5|C|967
9P7F|1|L5|C|968
9P7F|1|L5|C|969
9P7F|1|L5|G|970
9P7F|1|L5|U|971
9P7F|1|L5|C|972
9P7F|1|L5|G|973
9P7F|1|L5|C|974
9P7F|1|L5|C|975
9P7F|1|L5|G|976
*
9P7F|1|L5|C|1278
9P7F|1|L5|A|1279
9P7F|1|L5|C|1280
9P7F|1|L5|G|1281
9P7F|1|L5|G|1282
9P7F|1|L5|G|1283
9P7F|1|L5|G|1284

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32

Chain Lr

60S ribosomal protein L28