J3_9P7G_039

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

9P7G|1|S2|A|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7G|1|S2|U|1350
9P7G|1|S2|G|1351
*
9P7G|1|S2|U|1360
9P7G|1|S2|G|1361
9P7G|1|S2|U|1362
9P7G|1|S2|C|1363
*
9P7G|1|S2|G|1375
9P7G|1|S2|A|1376
9P7G|1|S2|U|1377
9P7G|1|S2|A|1378
9P7G|1|S2|A|1379

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SC

40S ribosomal protein S2

Chain SR

Small ribosomal subunit protein eS17