J3_9P7J_023
3D structure
- PDB id
- 9P7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UAUC*GU(PSU)*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9P7J|1|L5|A|4464, 9P7J|1|L5|U|4465
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9P7J_023 not in the Motif Atlas
- Homologous match to J3_9H3G_024
- Geometric discrepancy: 0.1207
- The information below is about J3_9H3G_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.4
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9P7J|1|L5|U|4463
9P7J|1|L5|A|4464
9P7J|1|L5|U|4465
9P7J|1|L5|C|4466
*
9P7J|1|L5|G|4491
9P7J|1|L5|U|4492
9P7J|1|L5|PSU|4493
*
9P7J|1|L5|A|4507
9P7J|1|L5|C|4508
9P7J|1|L5|U|4509
9P7J|1|L5|A|4510
9P7J|1|L5|A|4511
9P7J|1|L5|U|4512
9P7J|1|L5|A|4513
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LV
- 60S ribosomal protein L23
Coloring options: