J3_9P8C_006

3D structure

PDB id

9P8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9P8C|1|L5|G|959, 9P8C|1|L5|G|961, 9P8C|1|L5|C|962, 9P8C|1|L5|C|967, 9P8C|1|L5|C|968, 9P8C|1|L5|C|969, 9P8C|1|L5|G|970, 9P8C|1|L5|U|971, 9P8C|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8C|1|L5|C|712
9P8C|1|L5|C|713
*
9P8C|1|L5|G|955
9P8C|1|L5|A|956
9P8C|1|L5|G|957
9P8C|1|L5|G|958
9P8C|1|L5|G|959
9P8C|1|L5|A|960
9P8C|1|L5|G|961
9P8C|1|L5|C|962
9P8C|1|L5|G|963
9P8C|1|L5|A|964
9P8C|1|L5|G|965
9P8C|1|L5|A|966
9P8C|1|L5|C|967
9P8C|1|L5|C|968
9P8C|1|L5|C|969
9P8C|1|L5|G|970
9P8C|1|L5|U|971
9P8C|1|L5|C|972
9P8C|1|L5|G|973
9P8C|1|L5|C|974
9P8C|1|L5|C|975
9P8C|1|L5|G|976
*
9P8C|1|L5|C|1278
9P8C|1|L5|A|1279
9P8C|1|L5|C|1280
9P8C|1|L5|G|1281
9P8C|1|L5|G|1282
9P8C|1|L5|G|1283
9P8C|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32