J3_9P8C_025

3D structure

PDB id

9P8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CA(PSU)(PSU)CG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

9P8C|1|L5|U|4989, 9P8C|1|L5|C|4990, 9P8C|1|L5|A|5061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8C|1|L5|C|4970
9P8C|1|L5|A|4971
9P8C|1|L5|PSU|4972
9P8C|1|L5|PSU|4973
9P8C|1|L5|C|4974
9P8C|1|L5|G|4975
*
9P8C|1|L5|C|4983
9P8C|1|L5|C|4984
9P8C|1|L5|U|4985
9P8C|1|L5|G|4986
9P8C|1|L5|C|4987
9P8C|1|L5|U|4988
9P8C|1|L5|U|4989
9P8C|1|L5|C|4990
9P8C|1|L5|U|4991
*
9P8C|1|L5|A|5060
9P8C|1|L5|A|5061
9P8C|1|L5|G|5062
9P8C|1|L5|G|5063

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31