J3_9P9I_002

3D structure

PDB id

9P9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9P9I|1|L5|C|216, 9P9I|1|L5|C|217, 9P9I|1|L5|A|218, 9P9I|1|L5|G|219, 9P9I|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9I|1|L5|C|196
9P9I|1|L5|A|197
9P9I|1|L5|A|198
9P9I|1|L5|G|199
*
9P9I|1|L5|C|215
9P9I|1|L5|C|216
9P9I|1|L5|C|217
9P9I|1|L5|A|218
9P9I|1|L5|G|219
9P9I|1|L5|C|220
9P9I|1|L5|C|221
9P9I|1|L5|C|222
9P9I|1|L5|G|223
9P9I|1|L5|U|224
9P9I|1|L5|G|225
9P9I|1|L5|G|226
9P9I|1|L5|A|227
9P9I|1|L5|C|228
*
9P9I|1|L5|G|240
9P9I|1|L5|G|241
9P9I|1|L5|U|242
9P9I|1|L5|A|243
9P9I|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26