J3_9P9J_002

3D structure

PDB id

9P9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9P9J|1|L5|C|216, 9P9J|1|L5|C|217, 9P9J|1|L5|A|218, 9P9J|1|L5|G|219, 9P9J|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9J|1|L5|C|196
9P9J|1|L5|A|197
9P9J|1|L5|A|198
9P9J|1|L5|G|199
*
9P9J|1|L5|C|215
9P9J|1|L5|C|216
9P9J|1|L5|C|217
9P9J|1|L5|A|218
9P9J|1|L5|G|219
9P9J|1|L5|C|220
9P9J|1|L5|C|221
9P9J|1|L5|C|222
9P9J|1|L5|G|223
9P9J|1|L5|U|224
9P9J|1|L5|G|225
9P9J|1|L5|G|226
9P9J|1|L5|A|227
9P9J|1|L5|C|228
*
9P9J|1|L5|G|240
9P9J|1|L5|G|241
9P9J|1|L5|U|242
9P9J|1|L5|A|243
9P9J|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26