J3_9PA7_006

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9PA7|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|C|451
9PA7|1|L5|A|452
9PA7|1|L5|G|453
9PA7|1|L5|U|454
9PA7|1|L5|C|455
*
9PA7|1|L5|G|701
9PA7|1|L5|U|702
9PA7|1|L5|G|703
9PA7|1|L5|C|704
9PA7|1|L5|G|705
*
9PA7|1|L5|C|1292
9PA7|1|L5|G|1293
9PA7|1|L5|A|1294
9PA7|1|L5|C|1295
9PA7|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28