J3_9PA7_007

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9PA7|1|L5|G|959, 9PA7|1|L5|C|962, 9PA7|1|L5|G|965, 9PA7|1|L5|C|967, 9PA7|1|L5|C|968, 9PA7|1|L5|C|969, 9PA7|1|L5|U|971, 9PA7|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|C|712
9PA7|1|L5|C|713
*
9PA7|1|L5|G|955
9PA7|1|L5|A|956
9PA7|1|L5|G|957
9PA7|1|L5|G|958
9PA7|1|L5|G|959
9PA7|1|L5|A|960
9PA7|1|L5|G|961
9PA7|1|L5|C|962
9PA7|1|L5|G|963
9PA7|1|L5|A|964
9PA7|1|L5|G|965
9PA7|1|L5|A|966
9PA7|1|L5|C|967
9PA7|1|L5|C|968
9PA7|1|L5|C|969
9PA7|1|L5|G|970
9PA7|1|L5|U|971
9PA7|1|L5|C|972
9PA7|1|L5|G|973
9PA7|1|L5|C|974
9PA7|1|L5|C|975
9PA7|1|L5|G|976
*
9PA7|1|L5|C|1278
9PA7|1|L5|A|1279
9PA7|1|L5|C|1280
9PA7|1|L5|G|1281
9PA7|1|L5|G|1282
9PA7|1|L5|G|1283
9PA7|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32